Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APC11365.1Conjugative relaxosome accessory transposon protein. (469 aa)    
Predicted Functional Partners:
traF
Hypothetical protein.
 
   
 0.956
traG
TraG-like protein, N-terminal region.
 
     0.952
APC11367.1
Hypothetical protein.
 
     0.855
APC11368.1
Hypothetical protein.
 
     0.830
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
 
   
 0.825
traN
Conjugal transfer mating pair stabilization protein TraN.
 
   
 0.825
APC11386.1
TraE protein.
 
   
 0.823
APC11274.1
TraU protein.
 
   
 0.812
traU
TraU protein.
 
   
 0.812
APC11371.1
YqaJ-like viral recombinase domain protein.
 
     0.803
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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