STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traFHypothetical protein. (343 aa)    
Predicted Functional Partners:
traG
TraG-like protein, N-terminal region.
 
   
 0.950
APC11365.1
Conjugative relaxosome accessory transposon protein.
 
     0.946
traN
Conjugal transfer mating pair stabilization protein TraN.
 
   
 0.919
dsbD
Thiol:disulfide interchange protein DsbD precursor.
  
 
 0.897
traK
TraK protein.
  
   
 0.865
APC11367.1
Hypothetical protein.
 
     0.863
APC11368.1
Hypothetical protein.
 
 
   0.852
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 0.832
traC
AAA-like domain protein.
 
   
 0.829
traW
Type-F conjugative transfer system pilin assembly protein.
 
   
 0.821
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.