STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traCAAA-like domain protein. (828 aa)    
Predicted Functional Partners:
traU
TraU protein.
 
   
 0.970
traW
Type-F conjugative transfer system pilin assembly protein.
 
   
 0.969
lepB-2
Signal peptidase I; Belongs to the peptidase S26 family.
 
   
 0.951
dsbC_2
Thiol:disulfide interchange protein DsbC precursor; Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process; Belongs to the thioredoxin family. DsbC subfamily.
 
     0.947
traG
TraG-like protein, N-terminal region.
 
   
 0.910
traN
Conjugal transfer mating pair stabilization protein TraN.
 
   
 0.907
traK
TraK protein.
 
   
 0.906
APC11384.1
Bacterial conjugation TrbI-like protein.
 
   
 0.886
APC11386.1
TraE protein.
 
     0.883
traE-2
AAA-like domain protein.
 
  
 0.866
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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