Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traVType IV conjugative transfer system lipoprotein (TraV). (170 aa)    
Predicted Functional Partners:
traL
TraL protein.
     
 0.857
traK
TraK protein.
     
 0.854
APC11386.1
TraE protein.
       0.753
APC11384.1
Bacterial conjugation TrbI-like protein.
       0.752
traC
AAA-like domain protein.
     
 0.687
traU
TraU protein.
     
 0.685
dsbA
Hypothetical protein.
       0.685
APC11389.1
Hypothetical protein.
       0.680
lepB-2
Signal peptidase I; Belongs to the peptidase S26 family.
       0.519
traW
Type-F conjugative transfer system pilin assembly protein.
       0.514
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.