Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
traLTraL protein. (94 aa)    
Predicted Functional Partners:
traK
TraK protein.
     
 0.864
traV
Type IV conjugative transfer system lipoprotein (TraV).
     
 0.857
APC11386.1
TraE protein.
     
 0.804
APC11384.1
Bacterial conjugation TrbI-like protein.
       0.791
traD
Hypothetical protein.
     
 0.732
dsbA
Hypothetical protein.
       0.723
APC11389.1
Hypothetical protein.
       0.714
traF
Hypothetical protein.
     
 0.682
traC
AAA-like domain protein.
     
 0.680
traW
Type-F conjugative transfer system pilin assembly protein.
     
 0.671
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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