Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC11389.1Hypothetical protein. (93 aa)    
Predicted Functional Partners:
dsbA
Hypothetical protein.
       0.773
APC11384.1
Bacterial conjugation TrbI-like protein.
       0.714
traK
TraK protein.
       0.714
APC11386.1
TraE protein.
       0.714
traL
TraL protein.
       0.714
traV
Type IV conjugative transfer system lipoprotein (TraV).
       0.680
traD
Hypothetical protein.
       0.553
APC11391.1
Hypothetical protein.
       0.545
traE-2
AAA-like domain protein.
       0.545
APC11393.1
Putative helicase.
       0.545
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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