STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11449.1Zinc-binding domain of primase-helicase. (575 aa)    
Predicted Functional Partners:
APC11477.1
YqaJ-like viral recombinase domain protein.
 
     0.797
APC11448.1
Hypothetical protein.
       0.786
APC11475.1
Von Willebrand factor type A domain protein.
 
     0.786
APC11476.1
Hypothetical protein.
 
     0.783
APC11371.1
YqaJ-like viral recombinase domain protein.
 
     0.773
APC11294.1
AAA-like domain protein.
 
     0.768
traF
Hypothetical protein.
 
     0.768
traG
TraG-like protein, N-terminal region.
 
     0.767
traE-2
AAA-like domain protein.
 
     0.764
APC11279.1
F pilus assembly Type-IV secretion system for plasmid transfer.
 
     0.763
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.