STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11478.1RecT family protein. (329 aa)    
Predicted Functional Partners:
APC11477.1
YqaJ-like viral recombinase domain protein.
 
  
 0.897
APC11476.1
Hypothetical protein.
 
     0.754
cobS_2
Aerobic cobaltochelatase subunit CobS.
 
     0.754
APC11282.1
Hypothetical protein.
  
     0.715
APC11449.1
Zinc-binding domain of primase-helicase.
 
     0.713
APC11475.1
Von Willebrand factor type A domain protein.
 
     0.706
APC11286.1
TraE protein.
  
     0.688
APC11285.1
TraK protein.
  
     0.686
APC11371.1
YqaJ-like viral recombinase domain protein.
 
  
 0.684
APC11273.1
Conjugal transfer mating pair stabilization protein TraN.
  
     0.682
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.