STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobS_2Aerobic cobaltochelatase subunit CobS. (322 aa)    
Predicted Functional Partners:
cobS_1
Aerobic cobaltochelatase subunit CobS.
 
  
 
0.924
btuR
Cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
     
  0.900
APC11477.1
YqaJ-like viral recombinase domain protein.
 
     0.852
APC11476.1
Hypothetical protein.
 
     0.834
APC11475.1
Von Willebrand factor type A domain protein.
 
     0.827
APC11367.1
Hypothetical protein.
 
     0.785
APC11368.1
Hypothetical protein.
 
     0.781
APC11294.1
AAA-like domain protein.
 
   
 0.773
traF
Hypothetical protein.
 
     0.773
traE-2
AAA-like domain protein.
 
   
 0.772
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.