STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11501.1Putative transporter YfdV. (307 aa)    
Predicted Functional Partners:
APC12555.1
Hypothetical protein.
  
     0.570
maeB
NADP-dependent malic enzyme.
  
  
 0.561
APC13087.1
Putative ammonia monooxygenase.
  
     0.541
APC14022.1
Polysaccharide biosynthesis protein.
  
    0.494
glpX
Fructose-1,6-bisphosphatase 1 class 2.
       0.483
maeA
NAD-dependent malic enzyme.
  
  
 0.482
mdtO
Multidrug resistance protein MdtO.
  
     0.472
APC11355.1
Hypothetical protein.
  
     0.470
APC10196.1
DoxX.
  
     0.438
APC12107.1
Putative TonB-dependent receptor precursor.
 
     0.425
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.