STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcR_2HTH-type transcriptional repressor GlcR. (256 aa)    
Predicted Functional Partners:
APC11528.1
Hypothetical protein.
 
    0.814
pdxA2
4-hydroxythreonine-4-phosphate dehydrogenase 2; Belongs to the PdxA family.
       0.777
kdgT
2-keto-3-deoxygluconate permease; The 2-keto-3-deoxygluconate permease transports the degraded pectin products into the bacterial cell, where they serve as carbon and energy sources. This is a hydrogen coupled transport system. Belongs to the KdgT transporter family.
       0.772
fruA_2
PTS system fructose-specific EIIBC component.
 
  
 0.569
fruA_1
PTS system fructose-specific EIIBC component.
 
  
 0.568
lacC_1
Tagatose-6-phosphate kinase.
 
  
 0.496
lacC_3
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.488
lacC_2
Tagatose-6-phosphate kinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.484
ahpD_2
Alkyl hydroperoxide reductase AhpD; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.465
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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