STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulaA_1Ascorbate-specific permease IIC component UlaA. (418 aa)    
Predicted Functional Partners:
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
 
 
 0.996
ulaC_1
Ascorbate-specific phosphotransferase enzyme IIA component.
 
 
 0.995
ulaC_2
Ascorbate-specific phosphotransferase enzyme IIA component.
 
 
 0.980
ulaG
Putative L-ascorbate-6-phosphate lactonase UlaG.
 
 
 0.958
ulaA_2
Ascorbate-specific permease IIC component UlaA.
 
 
0.948
ptsH
Phosphocarrier protein HPr.
    
  0.901
ykgM
50S ribosomal protein L31 type B.
   
    0.645
ribC
Riboflavin synthase.
   
    0.645
APC10488.1
Hypothetical protein.
   
    0.640
proP_2
Proline/betaine transporter.
   
    0.636
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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