STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gutB_1D-arabitol-phosphate dehydrogenase. (370 aa)    
Predicted Functional Partners:
dhaL
PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL.
 
 
 0.647
dhaK
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK.
 
 
 0.641
lsrR_1
Transcriptional regulator LsrR.
 
     0.613
csbX_1
Alpha-ketoglutarate permease.
 
     0.601
ywlF
Putative sugar phosphate isomerase YwlF.
 
    0.482
gatC
Galactitol permease IIC component.
  
 0.466
tktA_2
Transketolase 1; Belongs to the transketolase family.
  
 
 0.446
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.