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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csbX_1Alpha-ketoglutarate permease. (423 aa)    
Predicted Functional Partners:
dhaL
PTS-dependent dihydroxyacetone kinase, ADP-binding subunit DhaL.
 
     0.770
dhaK
PTS-dependent dihydroxyacetone kinase, dihydroxyacetone-binding subunit DhaK.
       0.759
narG
Respiratory nitrate reductase 1 alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 0.658
gutB_1
D-arabitol-phosphate dehydrogenase.
 
     0.601
lsrR_1
Transcriptional regulator LsrR.
 
     0.571
narJ
Nitrate reductase molybdenum cofactor assembly chaperone NarJ.
  
  
 0.555
narH
Respiratory nitrate reductase 1 beta chain.
  
  
 0.552
APC11777.1
Gluconate 2-dehydrogenase subunit 3 precursor.
  
     0.478
narI
Respiratory nitrate reductase 1 gamma chain.
  
  
 0.461
cysG_1
Siroheme synthase.
  
  
 0.453
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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