Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sinRHTH-type transcriptional regulator SinR. (186 aa)    
Predicted Functional Partners:
APC11568.1
Branched-chain amino acid transport protein (AzlD).
 
   
 0.906
APC11567.1
AzlC protein.
 
   
 0.875
epsH
Putative glycosyltransferase EpsH.
      
 0.669
APC11565.1
Hypothetical protein.
       0.596
lldR_1
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.556
soxR
Redox-sensitive transcriptional activator SoxR.
 
  
 0.481
APC10896.1
Erythromycin esterase.
  
     0.476
APC11265.1
Erythromycin esterase.
  
     0.476
APC11492.1
Erythromycin esterase.
  
     0.476
pheA
P-protein.
  
  
 0.467
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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