STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sinRHTH-type transcriptional regulator SinR. (186 aa)    
Predicted Functional Partners:
APC11568.1
Branched-chain amino acid transport protein (AzlD).
 
   
 0.898
APC11567.1
AzlC protein.
 
   
 0.875
epsH
Putative glycosyltransferase EpsH.
      
 0.637
APC11565.1
Hypothetical protein.
       0.596
lldR_1
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.531
soxR
Redox-sensitive transcriptional activator SoxR.
 
  
 0.485
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
     
 0.477
APC10896.1
Erythromycin esterase.
  
     0.476
APC11265.1
Erythromycin esterase.
  
     0.476
APC11492.1
Erythromycin esterase.
  
     0.476
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.