Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ddpDPutative D,D-dipeptide transport ATP-binding protein DdpD; Belongs to the ABC transporter superfamily. (331 aa)    
Predicted Functional Partners:
sapB
Peptide transport system permease protein SapB.
 
 
 0.997
sapC
Peptide transport system permease protein SapC.
  
 0.987
dppA_2
Periplasmic dipeptide transport protein precursor.
 
  
 0.955
gsiA_1
Glutathione import ATP-binding protein GsiA.
 
  
0.941
oppC
Oligopeptide transport system permease protein OppC.
 
   
 0.919
dppC_1
Dipeptide transport system permease protein DppC.
 
   
 0.887
potA_3
Spermidine/putrescine import ATP-binding protein PotA.
 
    
0.885
artP
Arginine transport ATP-binding protein ArtP.
 
    
0.835
glnQ
Glutamine transport ATP-binding protein GlnQ.
 
     
0.821
ugpC
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.
 
    
0.791
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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