Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
sapCPeptide transport system permease protein SapC. (296 aa)    
Predicted Functional Partners:
gsiA_1
Glutathione import ATP-binding protein GsiA.
 
 0.998
sapB
Peptide transport system permease protein SapB.
 
 
 0.998
dppA_2
Periplasmic dipeptide transport protein precursor.
 
 
 0.997
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD; Belongs to the ABC transporter superfamily.
  
 0.987
oppF_4
Oligopeptide transport ATP-binding protein OppF.
     0.863
oppD_1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
     0.834
oppF_1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
     0.832
oppD_3
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
     0.808
dppB
Dipeptide transport system permease protein DppB.
 
     0.783
gsiC_3
Glutathione transport system permease protein GsiC.
 
     0.783
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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