STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspA_2Phage shock protein A. (159 aa)    
Predicted Functional Partners:
pspA_1
Phage shock protein A.
     0.993
pspC
Phage shock protein C.
 
 
 0.988
pspB_2
Phage shock protein B.
 
 
 0.978
arcB_2
Aerobic respiration control sensor protein ArcB.
    
 
 0.811
pspF
Psp operon transcriptional activator.
 
   
 0.750
yqiK
Inner membrane protein YqiK.
  
  
 0.475
APC11657.1
Peripheral inner membrane phage-shock protein.
       0.465
rcsD
Phosphotransferase RcsD.
  
 
 
 0.465
APC13019.1
TraB family protein.
  
     0.452
rplD
50S ribosomal protein L4; Forms part of the polypeptide exit tunnel.
      
 0.443
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.