STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspB_2Phage shock protein B. (76 aa)    
Predicted Functional Partners:
pspC
Phage shock protein C.
 
 
 0.998
pspA_1
Phage shock protein A.
 
 
 0.978
pspA_2
Phage shock protein A.
 
 
 0.978
arcB_2
Aerobic respiration control sensor protein ArcB.
  
 
 
 0.931
yfbV
Hypothetical protein.
  
     0.719
syd
SecY interacting protein Syd; Interacts with the SecY protein in vivo. May bind preferentially to an uncomplexed state of SecY, thus functioning either as a chelating agent for excess SecY in the cell or as a regulatory factor that negatively controls the translocase function. Belongs to the Syd family.
  
     0.698
APC11657.1
Peripheral inner membrane phage-shock protein.
       0.639
rcsD
Phosphotransferase RcsD.
    
 
 0.624
yejL
Hypothetical protein; Belongs to the UPF0352 family.
  
     0.616
ycjX
Hypothetical protein.
 
   
 0.614
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.