STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycjXHypothetical protein. (465 aa)    
Predicted Functional Partners:
ycjF
Hypothetical protein.
 
  
 0.990
pspB_2
Phage shock protein B.
 
   
 0.614
tyrR
Transcriptional regulatory protein TyrR.
  
  
 0.547
pspC
Phage shock protein C.
     
 0.542
APC11657.1
Peripheral inner membrane phage-shock protein.
       0.518
APC10678.1
L,D-transpeptidase catalytic domain.
  
     0.508
APC11113.1
Nickel/cobalt efflux protein RcnA.
  
     0.491
APC10132.1
Hypothetical protein.
  
     0.452
APC11017.1
Peptidase M15.
  
     0.448
APC13819.1
Lysophospholipase L2.
  
     0.446
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.