Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APC11671.1Aspartate racemase. (231 aa)    
Predicted Functional Partners:
dcyD_1
D-cysteine desulfhydrase.
 
  
  0.917
dcyD_2
D-cysteine desulfhydrase.
 
  
  0.917
alr_2
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.906
metC_1
Cystathionine beta-lyase MetC.
     
 0.902
serB
Phosphoserine phosphatase.
    
  0.901
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.901
glsA2
Glutaminase 2; Belongs to the glutaminase family.
     
  0.900
pssA
CDP-diacylglycerol--serine O-phosphatidyltransferase.
     
  0.900
glsA1
Glutaminase 1.
     
  0.900
sdaB
L-serine dehydratase 2; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
  0.900
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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