STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
appBCytochrome bd-II ubiquinol oxidase subunit 2. (336 aa)    
Predicted Functional Partners:
appC
Cytochrome bd-II ubiquinol oxidase subunit 1.
 0.999
cydA
Cytochrome bd-I ubiquinol oxidase subunit 1.
 0.997
cydX
Cytochrome bd-I ubiquinol oxidase subunit X.
  
 0.969
cydB
Cytochrome bd-I ubiquinol oxidase subunit 2.
  
  
 
0.923
cydD
ATP-binding/permease protein CydD.
 
  
 0.850
APC11692.1
Hypothetical protein.
       0.773
APC10964.1
Putative ABC transporter ATP-binding protein.
 
  
 0.754
putA_1
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
 0.739
ybgE
Hypothetical protein.
  
    0.646
ydcR
Putative HTH-type transcriptional regulator YdcR.
     
 0.615
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.