Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dmsD_2Tat proofreading chaperone DmsD. (225 aa)    
Predicted Functional Partners:
ynfF
Putative dimethyl sulfoxide reductase chain YnfF precursor.
 
   0.933
dmsA_2
Dimethyl sulfoxide reductase DmsA precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.932
dmsC_2
Anaerobic dimethyl sulfoxide reductase chain C.
 
    0.906
APC11699.1
Molybdenum cofactor biosynthesis protein A.
 
     0.899
dmsB_2
Anaerobic dimethyl sulfoxide reductase chain B.
 
    0.871
dmsA_3
Dimethyl sulfoxide reductase DmsA precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.793
ynfE_3
Putative dimethyl sulfoxide reductase chain YnfE precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.791
dmsA_4
Dimethyl sulfoxide reductase DmsA precursor.
 
   0.791
dmsA_1
Dimethyl sulfoxide reductase DmsA precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.789
ynfE_1
Putative dimethyl sulfoxide reductase chain YnfE precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   0.787
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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