STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecAFe(3+) dicitrate transport protein FecA precursor. (707 aa)    
Predicted Functional Partners:
fecI
Putative RNA polymerase sigma factor FecI; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.812
APC11706.1
Periplasmic binding protein.
     
 0.720
APC10348.1
Fec operon regulator FecR.
 
 
 0.668
ftsI
Peptidoglycan synthase FtsI precursor; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum; Belongs to the transpeptidase family. FtsI subfamily.
      
 0.602
ampC
Beta-lactamase.
  
   
 0.562
APC12072.1
Hypothetical protein.
  
     0.559
fimD_1
Outer membrane usher protein FimD precursor.
  
     0.528
eptC
Phosphoethanolamine transferase EptC.
  
     0.494
dmsC_2
Anaerobic dimethyl sulfoxide reductase chain C.
       0.438
dmsB_2
Anaerobic dimethyl sulfoxide reductase chain B.
       0.428
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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