STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbH_2Putative HTH-type transcriptional regulator YbbH. (281 aa)    
Predicted Functional Partners:
glvR
HTH-type transcriptional regulator GlvR.
  
     0.739
ptsG
PTS system glucose-specific EIICBA component.
 
  
 0.544
eda_1
KHG/KDPG aldolase.
 
   
 0.488
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
   
 0.474
murR_2
HTH-type transcriptional regulator MurR.
  
     0.473
pykA
Pyruvate kinase II; Belongs to the pyruvate kinase family.
     
 0.457
bglF_1
PTS system beta-glucoside-specific EIIBCA component.
  
  
 0.431
bglF_2
PTS system beta-glucoside-specific EIIBCA component.
  
  
 0.431
APC13430.1
PTS system EIIBC component.
  
  
 0.431
APC10727.1
DTW domain protein.
  
     0.402
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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