STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgHHypothetical protein. (316 aa)    
Predicted Functional Partners:
APC12068.1
Hypothetical protein.
  
     0.774
holE
DNA polymerase III subunit theta.
  
     0.774
mlaB
Putative phospholipid ABC transporter-binding protein MlaB.
  
     0.774
APC13510.1
Hypothetical protein.
  
     0.774
ymoA
Modulating protein YmoA.
  
     0.773
APC13961.1
Hypothetical protein.
  
     0.773
APC11718.1
Hypothetical protein.
  
     0.771
APC12453.1
Enhanced serine sensitivity protein SseB.
  
     0.771
yhjK
Biofilm formation regulator HmsP.
  
     0.770
APC13357.1
Hypothetical protein.
  
     0.769
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.