STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrK_3Putative multidrug resistance protein EmrK. (356 aa)    
Predicted Functional Partners:
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.969
yhhJ
Inner membrane transport permease YhhJ.
 
  
 0.965
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
 
 0.774
macB_1
Macrolide export ATP-binding/permease protein MacB; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.770
ybhS_1
Inner membrane transport permease YbhS.
 
  
 0.755
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
  
 0.750
ybhR
Inner membrane transport permease YbhR.
 
  
 0.704
ybhS_2
Inner membrane transport permease YbhS.
 
  
 0.700
cusC
Cation efflux system protein CusC precursor.
 
 
 0.618
arpC
Antibiotic efflux pump outer membrane protein ArpC precursor.
 
 
 0.581
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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