STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhF_2Putative ABC transporter ATP-binding protein YbhF. (918 aa)    
Predicted Functional Partners:
emrK_3
Putative multidrug resistance protein EmrK.
 
  
 0.969
yhhJ
Inner membrane transport permease YhhJ.
 
 
0.952
oppD_4
Oligopeptide transport ATP-binding protein OppD; Belongs to the binding-protein-dependent transport system permease family.
  
  
0.867
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
    0.764
ecfT
Energy-coupling factor transporter transmembrane protein EcfT.
  
 
 0.651
ybhS_2
Inner membrane transport permease YbhS.
 
  
 0.619
ydjA
Putative NAD(P)H nitroreductase YdjA.
  
  
 0.581
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
  
0.546
ybhR
Inner membrane transport permease YbhR.
 
 
0.538
emrK_2
Putative multidrug resistance protein EmrK.
 
  
 0.528
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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