Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
APC11843.1DNA-binding transcriptional regulator. (82 aa)    
Predicted Functional Partners:
APC13997.1
Phage capsid scaffolding protein (GPO) serine peptidase.
   
    0.636
APC13985.1
Gene 25-like lysozyme.
   
    0.631
APC11839.1
Phage P2 GpU.
   
    0.628
APC13975.1
Phage P2 GpU.
   
    0.628
APC13989.1
P2 phage tail completion protein R (GpR).
   
    0.622
APC13996.1
Phage major capsid protein, P2 family.
   
    0.616
APC13988.1
Phage virion morphogenesis family protein.
   
    0.613
APC13993.1
Phage Tail Protein X.
   
    0.592
APC13994.1
Phage head completion protein (GPL).
   
    0.584
APC14003.1
Bacteriophage replication gene A protein (GPA).
   
    0.584
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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