STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11900.1Putative transporter. (155 aa)    
Predicted Functional Partners:
APC11899.1
Putative transporter.
     0.994
APC10724.1
Lipoprotein.
  
     0.746
tusA_1
Sulfurtransferase TusA; Belongs to the sulfur carrier protein TusA family.
  
     0.661
yedE
Putative inner membrane protein.
  
     0.631
APC11197.1
Phage integrase family protein.
  
     0.620
chbR
HTH-type transcriptional regulator ChbR.
  
   
 0.613
APC11372.1
Recombination and repair protein RecT.
  
     0.605
APC11822.1
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
  
     0.578
dmsC_5
Anaerobic dimethyl sulfoxide reductase chain C.
  
     0.558
APC11901.1
Hypothetical protein.
       0.548
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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