Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
APC11919.1Toxin co-regulated pilus biosynthesis protein Q. (150 aa)    
Predicted Functional Partners:
APC11921.1
Hypothetical protein.
       0.768
APC11920.1
Hypothetical protein.
       0.755
APC11922.1
Flagellar basal body-associated protein FliL.
       0.755
tcpE
Toxin coregulated pilus biosynthesis protein E.
       0.754
APC11918.1
Hypothetical protein.
       0.752
APC11923.1
Hypothetical protein.
       0.716
tcpT
Toxin coregulated pilus biosynthesis protein T.
       0.716
outO_2
Type 4 prepilin-like proteins leader peptide-processing enzyme.
       0.686
APC11926.1
Hypothetical protein.
       0.683
tcpA
Toxin coregulated pilin precursor.
       0.549
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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