STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC11920.1Hypothetical protein. (491 aa)    
Predicted Functional Partners:
tcpE
Toxin coregulated pilus biosynthesis protein E.
  
  
 0.828
tcpT
Toxin coregulated pilus biosynthesis protein T.
  
  
 0.805
APC11921.1
Hypothetical protein.
       0.792
APC11922.1
Flagellar basal body-associated protein FliL.
       0.776
APC11923.1
Hypothetical protein.
       0.757
outO_2
Type 4 prepilin-like proteins leader peptide-processing enzyme.
     
 0.755
APC11919.1
Toxin co-regulated pilus biosynthesis protein Q.
       0.754
APC09910.1
Type III secretion system protein PrgH-EprH (PrgH).
   
 
 0.742
APC11926.1
Hypothetical protein.
       0.721
APC11918.1
Hypothetical protein.
  
  
 0.716
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.