Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC11923.1Hypothetical protein. (171 aa)    
Predicted Functional Partners:
APC11922.1
Flagellar basal body-associated protein FliL.
       0.773
tcpT
Toxin coregulated pilus biosynthesis protein T.
       0.773
tcpE
Toxin coregulated pilus biosynthesis protein E.
       0.773
APC11920.1
Hypothetical protein.
       0.757
APC11921.1
Hypothetical protein.
       0.757
APC11926.1
Hypothetical protein.
       0.737
outO_2
Type 4 prepilin-like proteins leader peptide-processing enzyme.
       0.737
APC11919.1
Toxin co-regulated pilus biosynthesis protein Q.
       0.716
APC11918.1
Hypothetical protein.
       0.666
tcpA
Toxin coregulated pilin precursor.
       0.505
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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