Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
dsbA_2Thiol:disulfide interchange protein DsbA precursor. (237 aa)    
Predicted Functional Partners:
dsbA_1
Thiol:disulfide interchange protein DsbA precursor.
    
 0.912
lagD
Lactococcin-G-processing and transport ATP-binding protein LagD.
 
     0.905
thiQ_1
Thiamine import ATP-binding protein ThiQ.
 
     0.828
macA_2
Macrolide export protein MacA.
 
 
   0.816
APC11931.1
Hypothetical protein.
       0.781
macB_2
Macrolide export ATP-binding/permease protein MacB.
 
   0.641
APC11929.1
Hypothetical protein.
       0.613
arpC
Antibiotic efflux pump outer membrane protein ArpC precursor.
 
     0.591
azr
NADPH azoreductase.
  
    0.490
fabG_2
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
     0.481
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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