STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lutR_1HTH-type transcriptional regulator LutR. (242 aa)    
Predicted Functional Partners:
pdhR_2
Pyruvate dehydrogenase complex repressor.
  
  
 0.719
lutR_2
HTH-type transcriptional regulator LutR.
  
  
 0.670
pdhR_1
Pyruvate dehydrogenase complex repressor.
  
  
 0.588
lutR_3
HTH-type transcriptional regulator LutR.
  
  
 0.575
nadR
Trifunctional NAD biosynthesis/regulator protein NadR.
   
  
 0.568
rhmD
L-rhamnonate dehydratase.
 
   
 0.562
lldR_2
Putative L-lactate dehydrogenase operon regulatory protein.
  
  
 0.543
ilvH
Acetolactate synthase isozyme 3 small subunit.
   
    0.453
ilvN
Acetolactate synthase isozyme 1 small subunit.
  
    0.451
APC11944.1
Cupin domain protein.
 
     0.412
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.