STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ampR_2HTH-type transcriptional activator AmpR. (287 aa)    
Predicted Functional Partners:
tfdS
HTH-type transcriptional regulator TfdS; Belongs to the LysR transcriptional regulatory family.
  
     0.748
benM_2
HTH-type transcriptional regulator BenM.
  
     0.739
cynR_1
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.738
dmlR_2
HTH-type transcriptional regulator DmlR; Belongs to the LysR transcriptional regulatory family.
  
     0.737
gcvA_1
Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.728
benM_1
HTH-type transcriptional regulator BenM; Belongs to the LysR transcriptional regulatory family.
  
     0.721
dmlR_4
HTH-type transcriptional regulator DmlR.
  
     0.704
cysL
HTH-type transcriptional regulator CysL; Belongs to the LysR transcriptional regulatory family.
  
     0.691
hcaR_1
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.678
dmlR_1
HTH-type transcriptional regulator DmlR; Belongs to the LysR transcriptional regulatory family.
  
     0.637
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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