Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
APC11970.1Hypothetical protein; DNA replication terminus site-binding protein. (305 aa)    
Predicted Functional Partners:
tomB
Hha toxicity modulator TomB.
  
     0.773
APC12453.1
Enhanced serine sensitivity protein SseB.
  
     0.773
bssS
Biofilm regulator BssS.
  
     0.771
APC12068.1
Hypothetical protein.
  
     0.770
holE
DNA polymerase III subunit theta.
  
     0.769
ynfB
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.768
APC12079.1
Hypothetical protein.
  
     0.765
secM
Secretion monitor precursor; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
   
 0.763
ydgH
Hypothetical protein.
  
     0.762
uspB
Universal stress protein B.
  
     0.759
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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