STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
osmBOsmotically-inducible lipoprotein B precursor. (72 aa)    
Predicted Functional Partners:
APC12317.1
YfaZ precursor.
  
     0.690
tomB
Hha toxicity modulator TomB.
  
    0.630
ynfB
Hypothetical protein; Belongs to the UPF0482 family.
  
     0.622
cpxP
Periplasmic protein CpxP precursor.
  
    0.581
bssS
Biofilm regulator BssS.
  
     0.580
yhjK
Biofilm formation regulator HmsP.
  
  
 0.550
APC11189.1
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
 
   0.543
yjdC
HTH-type transcriptional regulator YjdC.
  
     0.539
APC13482.1
YhhN-like protein.
  
     0.527
flgE
Flagellar hook protein FlgE.
   
 
 0.512
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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