STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aphAClass B acid phosphatase precursor; Belongs to the class B bacterial acid phosphatase family. (237 aa)    
Predicted Functional Partners:
fre_1
NAD(P)H-flavin reductase.
     
  0.900
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
     
  0.900
hpaC
4-hydroxyphenylacetate 3-monooxygenase reductase component.
     
  0.900
ribC
Riboflavin synthase.
     
  0.900
yigB
Flavin mononucleotide phosphatase YigB.
     
  0.900
APC11830.1
Hypothetical protein.
  
     0.618
hybB
Putative Ni/Fe-hydrogenase 2 b-type cytochrome subunit.
  
     0.541
nrfB
Cytochrome c-type protein NrfB precursor.
  
     0.540
hybE
Hydrogenase-2 operon protein HybE.
  
     0.535
APC14007.1
Hypothetical protein.
  
     0.519
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.