Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
oppA_2Periplasmic oligopeptide-binding protein precursor. (536 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transport system permease protein OppB.
 
 0.992
oppF_3
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.988
oppC
Oligopeptide transport system permease protein OppC.
 
 
 0.988
oppD_3
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.987
oppA_1
Periplasmic oligopeptide-binding protein precursor.
 
  
 
0.955
mppA
Periplasmic murein peptide-binding protein precursor.
 
  
 
0.911
oppD_4
Oligopeptide transport ATP-binding protein OppD; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.782
gsiC_3
Glutathione transport system permease protein GsiC.
 
 
 0.772
dppB
Dipeptide transport system permease protein DppB.
 
 
 0.726
gsiC_2
Glutathione transport system permease protein GsiC.
 
 
 0.674
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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