STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rssB_1Regulator of RpoS; Regulates the turnover of the sigma S factor (RpoS) by promoting its proteolysis in exponentially growing cells. Acts by binding and delivering RpoS to the ClpXP protease. RssB is not co- degraded with RpoS, but is released from the complex and can initiate a new cycle of RpoS recognition and degradation. (333 aa)    
Predicted Functional Partners:
arcB_2
Aerobic respiration control sensor protein ArcB.
 
 
 0.989
aer
Aerotaxis receptor.
 
 
 0.832
rcsD
Phosphotransferase RcsD.
 
 
 0.804
envZ_2
Osmolarity sensor protein EnvZ.
 
 
   0.789
cpxA
Sensor protein CpxA.
 
 
   0.780
arcB_1
Aerobic respiration control sensor protein ArcB.
 
 
   0.722
cheA
Chemotaxis protein CheA.
 
 
 0.719
phoB
Phosphate regulon transcriptional regulatory protein PhoB.
 
 
   0.707
rssA
Swarming motility regulation sensor protein RssA.
 
 
   0.704
tdk
Thymidine kinase.
 
      0.670
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.