STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APC12045.1Putative DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (281 aa)    
Predicted Functional Partners:
APC09919.1
Type III secretion system protein SpaO.
  
     0.740
APC12207.1
CYTH domain protein.
  
     0.717
APC12953.1
Phage capsid family protein.
  
     0.644
APC12958.1
Phage terminase, small subunit.
  
     0.622
APC12955.1
Hypothetical protein.
  
     0.581
APC12555.1
Hypothetical protein.
  
     0.568
mxiD
Outer membrane protein MxiD precursor.
  
     0.550
APC12831.1
Hypothetical protein.
  
     0.550
sicA_2
Chaperone protein SicA.
  
     0.534
APC13088.1
Bacterial regulatory protein, tetR family.
  
 
   0.532
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.