Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APC12072.1 | prc | RB151_024010 | RB151_024020 | Hypothetical protein. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.429 |
| APC12072.1 | proQ | RB151_024010 | RB151_024030 | Hypothetical protein. | ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism. Belongs to the ProQ family. | 0.406 |
| arcB_2 | nlpI | RB151_037310 | RB151_041000 | Aerobic respiration control sensor protein ArcB. | Lipoprotein NlpI precursor; May be involved in cell division. | 0.531 |
| arcB_2 | prc | RB151_037310 | RB151_024020 | Aerobic respiration control sensor protein ArcB. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.405 |
| arcB_2 | proQ | RB151_037310 | RB151_024030 | Aerobic respiration control sensor protein ArcB. | ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism. Belongs to the ProQ family. | 0.543 |
| arcB_2 | rseP | RB151_037310 | RB151_035410 | Aerobic respiration control sensor protein ArcB. | Regulator of sigma-E protease RseP. | 0.442 |
| envC | prc | RB151_044180 | RB151_024020 | Murein hydrolase activator EnvC precursor. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.544 |
| msrC | prc | RB151_024040 | RB151_024020 | Free methionine-R-sulfoxide reductase. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.594 |
| msrC | proQ | RB151_024040 | RB151_024030 | Free methionine-R-sulfoxide reductase. | ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism. Belongs to the ProQ family. | 0.698 |
| nfuA | prc | RB151_002630 | RB151_024020 | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.489 |
| nlpI | arcB_2 | RB151_041000 | RB151_037310 | Lipoprotein NlpI precursor; May be involved in cell division. | Aerobic respiration control sensor protein ArcB. | 0.531 |
| nlpI | prc | RB151_041000 | RB151_024020 | Lipoprotein NlpI precursor; May be involved in cell division. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.824 |
| nlpI | proQ | RB151_041000 | RB151_024030 | Lipoprotein NlpI precursor; May be involved in cell division. | ProP effector; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities. May regulate ProP activity through an RNA-based, post-transcriptional mechanism. Belongs to the ProQ family. | 0.770 |
| pheT | prc | RB151_019180 | RB151_024020 | Phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Tail-specific protease precursor; Belongs to the peptidase S41A family. | 0.434 |
| prc | APC12072.1 | RB151_024020 | RB151_024010 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Hypothetical protein. | 0.429 |
| prc | arcB_2 | RB151_024020 | RB151_037310 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Aerobic respiration control sensor protein ArcB. | 0.405 |
| prc | envC | RB151_024020 | RB151_044180 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Murein hydrolase activator EnvC precursor. | 0.544 |
| prc | msrC | RB151_024020 | RB151_024040 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Free methionine-R-sulfoxide reductase. | 0.594 |
| prc | nfuA | RB151_024020 | RB151_002630 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Fe/S biogenesis protein NfuA; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.489 |
| prc | nlpI | RB151_024020 | RB151_041000 | Tail-specific protease precursor; Belongs to the peptidase S41A family. | Lipoprotein NlpI precursor; May be involved in cell division. | 0.824 |
page 1 of 2