Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
manZ_1Mannose permease IID component. (283 aa)    
Predicted Functional Partners:
manX_1
PTS system mannose-specific EIIAB component.
 
 0.999
manY
Mannose permease IIC component.
 0.999
agaC
N-acetylgalactosamine permease IIC component 1.
 
 0.995
levE
Fructose-specific phosphotransferase enzyme IIB component.
 
 
 0.936
manX_2
PTS system mannose-specific EIIAB component.
 
 
 0.933
manA
Mannose-6-phosphate isomerase.
    
 0.907
ptsH
Phosphocarrier protein HPr.
    
 0.907
APC12091.1
Hypothetical protein.
 
    0.807
kdgK_2
2-dehydro-3-deoxygluconokinase.
    
 0.805
mak
Fructokinase.
   
 
  0.800
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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