Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
degU_2Transcriptional regulatory protein DegU. (206 aa)    
Predicted Functional Partners:
narX_1
Nitrate/nitrite sensor protein NarX.
 
 
 0.836
narX_2
Nitrate/nitrite sensor protein NarX.
 
 
 0.834
liaS
Sensor histidine kinase LiaS.
 
 
 
 0.776
uvrY
Response regulator UvrY.
  
     0.772
arcB_2
Aerobic respiration control sensor protein ArcB.
  
 
 0.673
APC12113.1
Putative reductase; Belongs to the ArsC family.
       0.485
arcB_1
Aerobic respiration control sensor protein ArcB.
 
 
 0.474
dapE_1
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.468
APC12115.1
D-alanyl-D-alanine carboxypeptidase.
       0.468
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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