STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecfTEnergy-coupling factor transporter transmembrane protein EcfT. (234 aa)    
Predicted Functional Partners:
ecfA1_1
Energy-coupling factor transporter ATP-binding protein EcfA1.
 
 0.999
ecfA1_2
Energy-coupling factor transporter ATP-binding protein EcfA1.
 
  
 0.973
APC12121.1
Hypothetical protein.
 
   
 0.954
APC12120.1
Hypothetical protein.
 
   
 0.811
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.695
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
  
 
 0.651
oppD_2
Oligopeptide transport ATP-binding protein OppD.
  
 
 0.622
gsiA_2
Glutathione import ATP-binding protein GsiA.
  
 
 0.622
oppF_4
Oligopeptide transport ATP-binding protein OppF.
  
 
 0.622
APC11852.1
Hypothetical protein.
  
     0.556
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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