Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APC12169.1Hypothetical protein. (163 aa)    
Predicted Functional Partners:
APC12555.1
Hypothetical protein.
  
     0.766
rmtB
16S rRNA (guanine(1405)-N(7))-methyltransferase.
  
     0.757
APC11904.1
Ferredoxin.
  
     0.755
fimA_2
Type-1 fimbrial protein, A chain precursor.
  
     0.750
APC14022.1
Polysaccharide biosynthesis protein.
 
     0.742
APC12585.1
Hypothetical protein.
  
     0.740
APC11880.1
Acetyltransferase (GNAT) family protein.
  
     0.729
APC12939.1
Fibronectin type III protein.
  
     0.722
APC11850.1
Methionine aminopeptidase.
 
     0.704
APC14076.1
Sulfatase.
  
     0.703
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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