STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nanAN-acetylneuraminate lyase. (296 aa)    
Predicted Functional Partners:
nanK
N-acetylmannosamine kinase.
 
 
 0.984
nanE
Putative N-acetylmannosamine-6-phosphate 2-epimerase.
 
  
 0.918
ybbH_3
Putative HTH-type transcriptional regulator YbbH.
    
  0.721
sglT_1
Sodium/glucose cotransporter.
 
  
 0.639
APC12830.1
Arylsulfatase.
  
     0.639
citF
Citrate lyase alpha chain.
   
    0.632
citX
Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase.
   
    0.618
fucP
L-fucose-proton symporter.
  
  
 0.578
betC
Choline-sulfatase.
  
   
 0.574
pheA
P-protein.
  
  
 0.573
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.