Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dinIDNA-damage-inducible protein I. (85 aa)    
Predicted Functional Partners:
APC13996.1
Phage major capsid protein, P2 family.
   
    0.923
APC13997.1
Phage capsid scaffolding protein (GPO) serine peptidase.
   
    0.920
APC13994.1
Phage head completion protein (GPL).
   
    0.891
APC13989.1
P2 phage tail completion protein R (GpR).
   
    0.867
APC13998.1
Terminase-like family protein.
   
    0.846
APC13988.1
Phage virion morphogenesis family protein.
   
    0.836
APC13985.1
Gene 25-like lysozyme.
   
    0.822
APC14003.1
Bacteriophage replication gene A protein (GPA).
   
    0.782
APC14004.1
Hypothetical protein.
   
    0.782
APC13993.1
Phage Tail Protein X.
   
    0.773
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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