Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rssASwarming motility regulation sensor protein RssA. (453 aa)    
Predicted Functional Partners:
rssB_2
Swarming motility regulation protein RssB.
 
 
 0.960
arcB_2
Aerobic respiration control sensor protein ArcB.
 
 
0.921
tctD
Transcriptional regulatory protein tctD.
 
 
 0.830
qseB
Transcriptional regulatory protein QseB.
 
 
 0.818
yycF
Transcriptional regulatory protein YycF.
 
 
 0.809
baeR
Transcriptional regulatory protein BaeR.
 
 
 0.805
kdpE
KDP operon transcriptional regulatory protein KdpE.
 
 
 0.786
phoP
Virulence transcriptional regulatory protein PhoP.
 
 
 0.785
cusR
Transcriptional regulatory protein CusR.
 
 
 0.769
envZ_2
Osmolarity sensor protein EnvZ.
  
     0.765
Your Current Organism:
Providencia rettgeri
NCBI taxonomy Id: 587
Other names: ATCC 29944, Bacterium rettgeri, CCUG 14804, CIP 103182, DSM 4542, LMG 3259, LMG:3259, NCTC 11801, P. rettgeri, Proteus rettgeri, Shigella rettgeri
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